- Life and Medical Sciences Institute (LIMES)
- Infectious Diseases
- Systems Biology
P. Stapor, L. Schmiester, C. Wierling, S. Merkt, D. Pathirana, B. M. H. Lange, D. Weindl, and J. Hasenauer. Mini-batch optimization enables training of ODE models on large-scale datasets. Nature Communications, 13(1):34, 2022. DOI: 10.1038/s41467-021-27374-6
E. K. Gudina, S. Ali, E. Girma, A. Gize, B. Tegene, G. B. Hundie, W. T. Sime, R. Ambachew, A. Gebreyohanns, M. Bekele, A. Bakuli, K. Elsbernd, S. Merkt, L. Contento, M. Hoelscher, J. Hasenauer, A. Wieser, and A. Kroidl. Seroepidemiology and model-based prediction of SARS-CoV-2 in Ethiopia: longitudinal cohort study among front-line hospital workers and communities. The Lancet Global Health, 9(11):e1517-e1527, November 2021. DOI: https://doi.org/10.1016/S2214-109X(21)00386-7 <\p>
E. Raimúndez, E. Dudkin, J. Vanhoefer, E. Alamoudi, S. Merkt, L. Fuhrmann, F. Bai, and J. Hasenauer. COVID-19 outbreak in Wuhan demonstrates the limitations of publicly available case numbers for epidemiological modeling. Epidemics, 34:100439, March 2021. DOI: https://doi.org/10.1016/j.epidem.2021.100439
L. Schmiester*, Y. Schälte*, F. T. Bergmann, T. Camba, E. Dudkin, J. Egert, F. Fröhlich, L. Fuhrmann, A. L. Hauber, S. Kemmer, P. Lakrisenko, C. Loos, S. Merkt, W. Müller, D. Pathirana, E. Raimúndez, L. Refisch, M. Rosenblatt, P. L. Stapor, P. Städter, D. Wang, F.-G. Wieland, J. R. Banga, J. Timmer, A. F. Villaverde, S. Sahle, C. Kreutz, J. Hasenauer**, and D. Weindl**. PEtab---Interoperable specification of parameter estimation problems in systems biology. PLOS Computational Biology, 17(1):1-10, January 2021. DOI: 10.1371/journal.pcbi.1008646
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